STRINGSTRING
hptA hptA SO_3060 SO_3060 SO_0312 SO_0312 SO_2119 SO_2119 SO_2127 SO_2127 SO_2422 SO_2422 rraB rraB SO_2914 SO_2914 yejL yejL bamD bamD slyX slyX
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hptAHistidine-containing phosphotransfer domain protein HptA. (121 aa)    
Predicted Functional Partners:
SO_3060
Outer membrane porin.
  
   
 0.847
SO_0312
Outer membrane porin.
  
   
 0.833
SO_2119
Protein phosphatase with response regulator reciever modulation.
  
 
 0.797
SO_2127
Diguanylate cyclase with response regulator receiver modulation.
  
 
 0.792
SO_2422
Protein of unknown function DUF1315.
  
    0.779
rraB
Ribonuclease E inhibitor RraB; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome.
  
    0.771
SO_2914
Protein of unknown function DUF412.
  
    0.771
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
  
     0.767
bamD
Beta barrel protein translocation component BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.762
slyX
Functionally uncharacterized protein SlyX; Belongs to the SlyX family.
  
     0.760
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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